2020
- Fox, E., Ver Hoef, J.M., Olsen, A. (2020) Comparing Spatial Regression to Random Forests for Large Environmental Data Sets. PLOS ONE 15(3):e0229509 DOI:10.1371/journal.pone.0229509
2019
- Bachl, R.E., Lindgren, F., Borchers, D.L. and Illian, J.B. (2019) inlabru: an R package for Bayesian spatial modelling from ecological survey data. Methods in Ecology and Evolution 10 760-766.
- Besbeas, P. and Morgan, B.J.T. (2019) Exact inference for integrated population modelling. Biometrics.
- Dennis,E.B., Brereton,T.M., Morgan,B.J.T., Fox,R., Shortfall,C.R., Prescott,T. and Foster,S. (2019) Trends and indicators for quantifying moth abundance and occupancy in Scotland. Journal of Insect Conservation pp 1-12.
- Dennis,E.B., Morgan,B.J.T., Fox,R., Roy, D.B. and Brereton,T.M. (2019) Functional data analysis of multi-species abundance and occupancy data sets. Ecological Indicators, 104, 156-165.
- Dias, F.S., Wenceslau, J.F.C., Marques, T. and Miller, D.L. (2019) Density and distribution of western chimpanzees around a bauxite deposit in the Boé Sector, Guinea‐Bissau. American Journal of Primatology 81 (9).
- Glennie, R., Borchers, D. L., Murchie, M., Harmsen, B. J, & Foster, R. J. (2019) Open population maximum likelihood spatial capture-recapture. Biometrics 75 (4) 1345-1355
- Harris, C.M., Burt, L.M., Allen, A.N., Wensveen, P.J., Miller, P J.O. and Sivle, L.D. (2019) Foraging Behavior and Disruption in Blue, Fin, and Humpback Whales in Relation to Sonar Exposure: The Challenges of Generalizing Responsiveness in Species with High Individual Variability Aquatic Mammals, 45(6), 646-660
- Harris, C.M., Martin, S., Martin, C., Helble, T., Henderson, E., Paxton, C.G.M. and Thomas, L. (2019) Changes in the spatial distribution of acoustically derived Minke whale (Balaenoptera acutorostrata) tracks in response to navy training. Aquatic Mammals 45 661-674.
- Miller, D.L., Glennie, R. and Seaton A.E. (2019) Understanding the Stochastic Partial Differential Equation Approach to Smoothing Journal of Agricultural, Biological and Environmental Statistics, pp 1-16.
- Miller, D.L., Rexstad, E., Thomas, L., Marshall, L. and Laake, J.L. (2019) Distance Sampling in R. Journal of Statistical Software, 89 (1).
- Soriano-Redondo, A, Jones-Todd CM, Bearhop, S, Hilton GM, Lock L, Stanbury A, Votier SC, Illian JB, (2019) Estimating species distribution in highly dynamic populations using point process models Ecography
- Southall, B.L., DeRuiter, S.L., Friedlaender, A., Stimpert, A.K., Goldbogen, J.A., Hazen, E., Casey, C., Fregosi, S., Cade, D.E., Allen, A.N., Harris, C.M., Schorr, G., Moretti, D., Guan, S. and Calambokidis, J. (2019). Behavioral responses of individual blue whales (Balaenoptera musculus) to mid-frequency military sonar. J. Exp. Biol. 222, jeb190637
- Stevenson, B., Borchers, D.L. and Fewster, R.M. (2019) Cluster capture-recapture to account for identification uncertainty on aerial surveys of animal populations. Biometrics 75 326-336.
- Verfuss, U.K., Aniceto, A.S., Harris, D.V., Gillespie, D., Fielding, S., Jiménez, G., Johnston, P., Sinclair, R.R., Sivertsen, A., Solbø, S. A., Storvold, R., Biuw, M. & Wyatt, R. (2019). A review of unmanned vehicles for the detection and monitoring of marine fauna. Marine Pollution Bulletin, 140, 17-29.
2018
- Barlow, J., Griffiths, E.T., Klinck, H., & Harris, D.V. (2018). Diving behavior of Cuvier’s beaked whales inferred from three-dimensional acoustic localization and tracking using a nested array of drifting hydrophone recorders. Journal of the Acoustical Society of America, 144(4), 2030-2041.
- Conn, P.B. and Alisauskas, R. (2018) Simultaneous modelling of movement, measurement error, and observer dependence in double observer distance sampling surveys. Annals of Applied Statistics. 12 (1) 96-122.
- Efford, M.G. and Hunter, C.M. (2018) Spatial capture–mark–resight estimation of animal population density.Biometrics 74 (2), 411-420 DOI: 10.1111/biom.12766
- Gerrodette T, WL Perryman & CS Oedekoven (2018) Accuracy and precision of dolphin group size estimates. Marine Mammal Science.
- Harris, D.V., Miksis-Olds, J.L., Vernon, J.A., Thomas, L. (2018) Fin whale density and distribution estimation using acoustic bearings derived from sparse arrays. The Journal of the Acoustical Society of America, 143, 2980.
- Jones‐Todd, C.M., Swallow, B., Illian, J., Toms, M.(2018) A spatiotemporal multispecies model of a semicontinuous response. Royal Statistical Society, 67, no. 3, pp. 705-722.
- Miksis-Olds, J.L. and Harris, D.V. (2018) Two unit analysis of Sri Lankan pygmy blue whale song over a decade The Journal of the Acoustical Society of America 144, Issue 6, 3618.
- Sebastián-González, E. Camp, R.J., Tanimoto, A.M., de Oliveira, P.M., Lima, B.B., Marques, T.A. and Hart, P. (2018) Density estimation of sound-producing terrestrial animals using single automatic acoustic recorders and distance sampling. Avian Conservation and Ecology 13(2) 7.
- Hooten, M.B. and Johnson, D.S. (2017 Early view) Basis function models for animal movement. Journal of the American Statistical Association.
- Law, R. and Barry, J. (in press) Long-term time-trends in organohalogen concentrations in blubber of porpoises from the UK. Proceedings of the ECS-AS COBANS-ACCOBAMS workshop.
2017
- Altwegg, R., Visser, V., Bailey, L.D. and Erni, B. (2017) Learning from single extreme events Phil. Trans. R. Soc. B 372, (1732), 20160141.
- Barry, J., Maxwell, D., Jennings, S., Walker, D. and Murray, J. (2017) Emon: an R‐package to support the design of marine ecological and environmental studies, surveys and monitoring programmes. Methods in Ecology and Evolution.
- Besbeas, PT and Morgan BJT (2017) Variance estimation for integrated population models. Advances in Statistical Analysis
- Buckland, S.T. & Johnston, A. (2017) Monitoring the biodiversity of regions: key principles and possible pitfalls. Biological Conservation, 214, pp. 23-34.
- Carvell, C., Bourke, A.F.G., Dreier, S., Freeman, S.N., Hulmes, S., Jordan, W.C., Redhead, J.W., Sumner, S., Wang, J. and Heard, M.S. (2017) Bumblebee family lineage survival is enhanced in high quality landscapes. Nature 543, 547-549.
- Chen, F, Shapiro, GI, Bennett, KA, Ingram, SN, Thompson, D, Vincent, C, Russell, DJF & Embling, CB (2017) Shipping noise in a dynamic sea: a case study of grey seals in the Celtic Sea Marine Pollution Bulletin.114, (1) 372-383
- Conn, P.B., Johnson, D.S. and Thorson, J.T. (2017) Confronting preferential sampling when analyzing population distributions: diagnosis and model-based triage. Methods in Ecology and Evolution 8: 1535-1546.
- Cowen, L.L.E., Besbeas, P., Morgan, B.J.T. and Schwarz, C.J. (2017) Hidden Markov Models for Extended Batch Data, Biometrics, DOI: 10.1111/biom.12701
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Dennis, E.B., Morgan, B.J.T., Brereton,T.M., Roy D.B. and Fox, R. (2017) Using citizen science butterfly counts to predict species population trends. Conservation Biology
- Dennis, E.B., Morgan, B.J.T., Freeman, S.N., Ridout, M.S., Brereton,T.M., Fox, R., Powney, G.D. and Roy D.B. (2017) Efficient occupancy model-fitting for extensive citizen-science data. PLOS ONE
- Dennis, E.B., Morgan, B.J.T., Roy D.B. and Brereton,T.M. (2017 online) Urban indicators for UK butterflies. Ecological Indicators 76 184-199.
- Donovan, CR, Harris, CM, Milazzo, L, Harwood, J, Marshall, LH and Williams, R (2017 ), A simulation approach to assessing environmental risk of sound exposure to marine mammals‘ Ecology and Evolution. 7 (7), 2101-2111.
- Guillera-Arroita, G. (2017) Modelling of species distributions, range dynamics and communities under imperfect detection: advances, challenges and opportunities. Ecography 40 (2).
- Guillera-Arroita, G.and Lahoz-Monfort, J.J. (2017 online) Species occupancy estimation and imperfect detection: shall surveys continue after the first detection? Advances in Statistical Analysis
- Guillera-Arroita, G., Lahoz-Monfort, J.J., van Rooyen, A.R., Weeks, A.R. and Tingley, R. (2017 online) Dealing with false positive and false negative errors about species occurrence at multiple levels Methods in Ecology and Evolution
- Hooten, M.B., Johnson, D.S., McClintock, B.T., and Morales, J.M. (2017) Animal Movement: Statistical Models for Telemetry . CRC Press, 289pp.
- Lahoz-Monfort, J.J., Harris, M.P., Wanless, S., Freeman, S.N., Morgan, B.J.T. (2017) Bringing It All Together: Multi-species Integrated Population Modelling of a Breeding Community. Journal of Agricultural, Biological and Environmental Statistics. 22 (2) 140-160.
- Oedekoven, CS, Elston, DA, Harrison, PJ, Brewer, MJ, Buckland, ST, Johnston, A, Foster, S & Pearce-Higgins, JW (2017) Attributing changes in the distribution of species abundance to weather variables using the example of British breeding birds. Methods in Ecology and Evolution, 8 (12), 1690-1702.
- Spence, M.A. and Turtle, A.J. (early view 2017) Making the most of survey data: Incorporating age uncertainty when fitting growth parameters. Ecology and Evolution.
2016
- Blackwell, P.G., Niu, M., Lambert, M.S. and LaPoint, S.D. (2016) Exact Bayesian inference for animal movement in continuous time. Methods in Ecology and Evolution. 7 (2) 184-195.
- Brown, C., Illian, J.B. and Burslem, D.F.R.P. (2016) Success of spatial statistics in determining underlying process in simulated plant communities. Journal of Ecology 104 (1) 160-172.
- Buckland, S.T. and Morgan, B.J.T. (2016) 50-Year Anniversary of Papers by Cormack, Jolly and Seber
Statistical Science, 31, 2, 141.
- Buckland S.T., Oedekoven, C.S. and Borchers, D.L. (2016) Model-based distance sampling. Journal of Agricultural, Biological and Environmental Statistics. 21 (1) 58-75.
- Dennis, E. B., Morgan, B. J. T., Freeman, S. N., Brereton, T. and Roy, D. B. (2016) A generalised abundance index for seasonal invertebrates. Biometrics, 72, 4, 1305-1314.
- Dennis, E.B., Morgan, B.J.T., Freeman, S.N., Roy, D.B. and Brereton, T. (2016) Dynamic Models for Longitudinal Butterfly Data. Journal of Agricultural, Biological, and Environmental Statistics 21 (1) 1-21.
- Donovan, C., Harwood, J., King, S., Booth, C., Caneco, B., & Walker, C. (2016). “Expert elicitation methods in quantifying the consequences of acoustic disturbance from offshore renewable energy developments”. In The Effects of Noise on Aquatic Life II (pp. 231-237). Springer New York.
- Erichson, N. B., & Donovan, C. (2016). Randomized low-rank Dynamic Mode Decomposition for motion detection. Computer Vision and Image Understanding, 146, 40-50.
- Fasiolo, M., Pya, N. and Wood, S.N. (2016) A Comparison of Inferential Methods for Highly Nonlinear State Space Models in Ecology and Epidemiology. Statistical Science 31 (1) 96-118.
- Gálvez, N., Guillera-Arroita, G., Morgan, B.J.T., and Davies, Z. G. (2016) Cost-efficient effort allocation for camera-trap occupancy surveys of mammals. Biological Conservation, DOI 10.1016/j.biocon.2016.10.019
- Harrison P.J., Yuan, Y., Buckland, S.T., Oedekoven, C.S., Elston, D., Brewer, M.J., Johnston, A. and Pearce-Higgins, J.W. (2016) Quantifying turnover in biodiversity of British breeding birds. Journal of Applied Ecology 53 469-478.
- Harwood, J., King, S., Booth, C., Donovan, C., Schick, R. S., Thomas, L., & New, L. (2016). “Understanding the Population Consequences of Acoustic Disturbance for Marine Mammals”. In The Effects of Noise on Aquatic Life II (pp. 417-423). Springer New York.
- Hastie, GD, Russell, DJ, Benjamins, S, Moss, S, Wilson, B and Thompson, D (2016) Dynamic habitat corridors for marine predators: intensive use of a coastal channel by harbour seals is modulated by tidal currents.Behavioral Ecology and Sociobiology. 70, (12) 2161-2174
- Johnson, D. S., J. L. Laake, S. R. Melin, and R. L. DeLong. (2016) Multivariate state hidden Markov models for mark-recapture data. Stat. Sci. 31:233–244. DOI: 10.1214/15-STS542
- King, R. and Langrock, R. (2016) Semi-Markov Arnason–Schwarz models. Biometrics, 72, (2) 619-628.
- Ledo, A, Illian, JB, Schnitzer, SA, Wright, SJ, Dalling, JW & Burslem, DFRP (2016) Lianas and soil nutrients predict fine-scale distribution of above-ground biomass in a tropical moist forest Journal of Ecology
- Lucke, K, Hastie, GD, Ternes, K, McConnell, BJ, Moss, S, Russell, DJ, Weber, H & Janik, V. (2016), Phoca vitulina) using auditory brainstem responses. Journal of Comparative Physiology A: Neuroethology, Sensory, Neural, and Behavioral Physiology 202, (12) 859-868.
- Matechou, E., McCrea, R.S., Morgan, B.J.T., Nash, D. and Griffiths, R.A.. (2016) Open models for removal data. Annals of Applied Statistics, 10, 3, 1572-1589. ISSN 1932-6157. E-ISSN 1941-7330. (doi:10.1214/16-AOAS949)
- Matechou, E., Nicholls, G.K., Morgan, B.J.T., Collazo, J. A. and Lyons, J.E. (2016) Bayesian analysis of Jolly-Seber type models; Incorporating heterogeneity in arrival and departure. Environmental and Ecological Statistics, 23, 531-547. (doi:10.1007/s10651-016-0352-0)
- McCrea, R.S., Morgan, B.J. T. and Gimenez, O. (2016) A new strategy for diagnostic goodness-of-fit assessment in capture-recapture. Journal of the Royal Statistical Society: Series C (Applied Statistics), DOI 10.1111/rssc.12197.
- Measey, GJ, Stevenson, B, Scott, T, Altwegg, R and Borchers, DL (2016) Counting chirps: acoustic monitoring of cryptic frogs. Journal of Applied Ecology.
- Oedekoven, C.S., King, R., Buckland, S.T., Mackenzie, M.L., Evans, K.O., Burger Jr., K.O. (2016) Using hierarchical centering to facilitate a reversible jump MCMC algorithm for random effects models. Computational Statistics & Data Analysis , 98, 79-90.
- Paxton, C.G.M. (2016) ‘Unleashing the Kraken: on the maximum length in giant squid (Architeuthis sp.)’ Journal of Zoology. 300 (2) pp 82-88. DOI: 10.1111/jzo.12347
- Simpson, D., Illian, J. B., Lindgren, F., Sørbye , S. & Rue, H. (2016) Going off grid: Computationally efficient inference for log-Gaussian Cox processes. Biometrika, 103 (1), 49-70.
- Spence, M.A. and Blackwell, P.G. (2016) Coupling random inputs for parameter estimation in complex models Statistics and Computing, 26, (60), 1137–1146.
- Spence, M.A. and Blackwell, P.G.and Blanchard, J.L. (2016) Parameter uncertainty of a dynamic multi-species size spectrum model. Canadian Journal of Fisheries and Aquatic Sciences, 73(4), 589-597.
- Yuan, Y., Buckland, S.T., Harrison, P.J., Foss, S. and Johnston, A. (Online 2016) Using Species Proportions to Quantify Turnover in Biodiversity. Journal of Agricultural, Biological, and Environmental Statistics.
2015
- Altieri, L., Scott, E.M., Cocchi, D. and Illian, J.B. (2015) A changepoint analysis of spatio-temporal point processes. Spatial Statistics 14 Part B 197-207
- Bagchi, R. and Illian, J.B. (2015) A method for analyzing replicated point patterns in ecology. Methods in Ecology and Evolution 6 (4) 482-490
- Barry, J., Eggleton, J., Ware, S. and Curtis, M. (2015) Generalizing Visual Fast Count Estimators for Underwater Video Surveys. Ecosphere 6 art. 249.
- Borchers, D.L. and Langrock, R. (2015) Double-Observer Line Transect Surveys with Markov-Modulated Poisson Process Models for Overdispersed Animal Availability. Biometrics. 71 (4) 1060-1069.
- Borchers, D.L., Stevenson, B.C., Kidney, D., Thomas, L., and Marques, T.A. (2015) A unifying model for capture-recapture and distance sampling surveys of wildlife populations. Journal of the American Statistical Association. 10: 195-201.
- Capuzzo, E., Stephens, D., Silva, T., Barry, J. and Forster, R. (2015) Decrease in water clarity of the southern and central North Sea during the twentieth-century. Global Change Biology. 21 (6), 2206 – 2214.
- Carvalho, J.S., Vicente, L. Marques, T. A. (2015) Chimpanzee Pan troglodytes verus Diet composition and food availability in a human-modified landscape at Lagoas de Cufada National Park, Guinea-Bissau. International Journal of Primatology. 36 802-822.
- Conn, P.B., Johnson, D.S. and Boveng, P.L. (2015) On Extrapolating Past the Range of Observed Data When Making Statistical Predictions in Ecology. PLoS ONE 10(10): e0141416.
- Conn, P.B., Johnson, D.S., Ver Hoef, J. M., Hooten, M.B., London, J.L. and Boveng, P.L. (2015) Using spatio-temporal statistical models to estimate animal abundance and infer ecological dynamics from survey counts. Ecological Monographs 85: 235-252.
- Dennis, E,B., Morgan, B.J.T. and Ridout, M.S. (2015) Open Access Computational aspects of N-mixture models. Biometrics 71, 237-246.
- Efford, M.G., Dawson, D.K., Jhala, Y.V. and Qureshi, Q. (2015) Density-dependent home-range size revealed by spatially explicit capture–recapture. Ecography
- Glennie, R., Buckland, S.T. and Thomas, L. (2015) The effect of animal movement on line transect estimates of abundance PLoS One.
- Jones, E., McConnell, B., Smout, S., Hammond, P., Duck, C., Morris, C., Thompson, D., Russell, D., Vincent, C., Cronin, M., Sharples, R. & Matthiopoulos, J. (2015) Patterns of space use in sympatric marine colonial predators reveal scales of spatial partitioning. Marine Ecology Progress Series, 534, 235–249.
- King, S. L., Schick, R. S., Donovan, C., Booth, C. G., Burgman, M., Thomas, L., & Harwood, J. (2015). “An interim framework for assessing the population consequences of disturbance”. Methods in Ecology and Evolution, 6(10), 1150-1158.
- Langrock, R., Kneib, T., Sohn, A. and DeRuiter, S.L. (2015 ) Nonparametric inference in hidden Markov models using P-splines. Biometrics 71 (2) 520-528.
- Laplanche, C., Marques, T. A. & Thomas, L. (2015) Tracking marine mammals in 3D using electronic tag data. Methods in Ecology and Evolution. 6 (9) 987-996.
- McClintock, B. T. (2015) multimark: an R package for analysis of capture–recapture data consisting of multiple “noninvasive” marks”. Ecology and Evolution 5, (21), 4920-4931.
- McClintock, B.T., London, J.M., Cameron, M.F. and Boveng, P.L. (2015) Modeling animal movement using the Argos satellite telemetry error ellipse. Methods in Ecology and Evolution. 6 (3) 266-277.
- McClintock, B.T., Onorato, D.P., Martin, J. (2015) Endangered Florida panther population size determined from public reports of motor vehicle collision mortalities. Journal of Applied Ecology. 52, (4) 893–901.
- Matechou, E., Cheng S.C., Kidd, L. and Garroway, C. (2015) Reproductive consequences of the timing of seasonal movements in a non-migratory wild bird population. Ecology 96 (6) 1641-1649.
- Matias, L. & Harris, D. (2015) A single-station method for the detection, classification and location of fin whale calls using ocean-bottom seismic stations Journal of the Acoustical Society of America, 138, (1) 504-520.
- Miller, D.L. and Thomas, L. (2015) Mixture models for distance sampling detection functions. PLOS One.
- Moffat, C., Goncalves Pacheco, J., Sharpe, S., Samson, A.J., Bollan, K.A., Huang, J., Buckland, S.T. and Connolly, C.N. (2015) Chronic exposure to imidacloprid increases neuronal vulnerability to mitochondrial dysfunction in bumblebees. Federation of American Societies of Experimental Biology Journal 29 (5) 2112-2119.
- Nightingale, G.F., Illian, J.B. and King, R. (2015) Pairwise Interaction Point Processes for Modelling Bivariate Spatial Point Patterns in the Presence of Interaction Uncertainty. Journal of Environmental Statistics, 7 (3).
- Oedekoven C.S., Fleishman, E., Hamilton, P., Clark, J.S. and Schick, R.S. (2015) Expert elicitation of seasonal abundance of North Atlantic right whales (Eubalaena glacialis) in the mid-Atlantic. Endangered Species Research, 29, 51-58.
- Oedekoven, C.S., Laake, J.L and Skaug, H.J. (2015) Distance sampling with a random scale detection function. Environ Ecol Stat, 22, 725–737.
- Photopoulou, T., Lovell, P., Fedak, M.A., Thomas, L. and Matthiopoulos, J. (2015) Efficient abstracting of dive profiles using a broken-stick model. Methods in Ecology and Evolution 6 (3) 278-288.
- Pirotta, E., Thompson, P. M., Cheney, B., Donovan, C. R., & Lusseau, D. (2015). “Estimating spatial, temporal and individual variability in dolphin cumulative exposure to boat traffic using spatially explicit capture–recapture methods”. Animal Conservation, 18(1), 20-31.
- Pirotta, E., Harwood, J., Thompson, P.M., New, L., Cheney, B., Arso, M., Hammond, P.S., Donovan, C. and Lusseau, D., (2015). “Predicting the effects of human developments on individual dolphins to understand potential long-term population consequences”. In Proc. R. Soc. B (Vol. 282, No. 1818, p. 20152109). The Royal Society.
- Pocock, M.J.O., Newson, S.E., Henderson, I.G., Peyton, J., Sutherland, W.J., Noble, D.G., Ball, S.G., Beckman, B.C., Biggs, J., Brereton, T., Bullock, D.J., Buckland, S.T., Edwards, M., Eaton, M.A., Harvey, M.C., Hill, M.O., Horlock, M., Hubble, D.S., Julian, A.M., Mackey, E.C., Mann, D.J., Marshall, M.J., Medlock, J.M., O’Mahony, E.M., Pacheco, M., Porter, K., Prentice, S., Procter, D.A., Roy, H.E., Southway, S.E., Shortall, C.R., Stewart, A.J.A., Wembridge, D.E., Wright, M.A. and Roy, D.B. (2015) Developing and enhancing biodiversity monitoring programmes: a collaborative assessment of priorities. J. App. Ecol 52 (3) 686-695.
- Rekdal, S.L., Hansen, R.G., Borchers, D.L., Bachmann, L., Laidre, K.L., Wiig, O., Nielsen, N.H., Fossette, S., Tervo, O. and Heide-Jørgensen, M.P. (2015) Trends in bowhead whales in West Greenland: Aerial surveys vs. genetic capture-recapture analyses. Marine Mammal Science 31: 133-154.
- Roy, D.B., Ploquin, E.F., Randle, Z., Risely, K., Botham, M.S., Middlebrook, I., Noble, D., Cruickshanks, K., Freeman, S.N. and Brereton, T.M. (2015) Comparison of trends in butterfly populations between monitoring schemes. Journal of Insect Conservation 19, (2), 313-324.
- Russell, D.J.F., McClintock, B.T., Matthiopoulos, J., Thompson, P., Thompson, D., Hammond, P.S., Jones, E.L., MacKenzie, M., Moss, S. and McConnell, B.J. (2015 ) Intrinsic and extrinsic drivers of activity budgets in sympatric grey and harbour seals. Oikos.
- Schaub, M. and Fletcher, D. (2015) Estimating immigration using a Bayesian integrated population model: choice of parametrisation and priors. Environmental and Ecological Statistics 22 (3) 535-549.
- Scott-Hayward, L.A.S, Mackenzie, M.L., Ashe, E. and Williams, R. (2015). Modelling Killer Whale Feeding Behaviour Using a Spatially Adaptive Complex Region Spatial Smoother (CReSS) and Generalised Estimating Equations (GEEs). Journal of Agricultural, Biological, and Environmental Statistics 20 (3) 305-322.
- Sousa, A.G. and Harris, D. (2015) Description and seasonal detection of two potential whale calls recorded in the Indian Ocean. Journal of the Acoustical Society of America 138, (3) 1379-1388.
- Stevenson, B.C., Borchers, D.L., Altwegg, R., Swift, R.J., Gillespie, D.M., and Measey, G.J. (2015) A general framework for animal density estimation from acoustic detections across a fixed microphone array. Methods in Ecology and Evolution, 6 38-48.
- Sutherland, C., Fuller, A.K.and Royle, J.A. (2015) Modelling non-Euclidean movement and landscape connectivity in highly structured ecological networks. Methods in Ecology and Evolution 6 (2) 169-177.
- Swallow, B., Buckland, S.T., King, R. and Toms, M.P. (2015) Bayesian hierarchical modelling of continuous non-negative longitudinal data with a spike at zero: An application to a study of birds visiting gardens in winter. Biometrical Journal.
2014
- Auger-Méthé, M., Plank, M.J., Codling, E.A. (2014) Distinguishing between Lévy walks and strong alternative models: comment. Ecology, 95 1104-1109.
- Besbeas, P.T. and Morgan, B.J.T. (2014) Goodness of fit of integrated population models using calibrated simulation. Methods in Ecology and Evolution, 5, 1373-1382.
- Borchers, D., Distiller, G., Foster, R., Harmsen, B., Milazzo, L. (2014) Continuous-time spatially explicit capture–recapture models, with an application to a jaguar camera-trap survey. Methods in Ecology and Evolution, 5: 656–665.
- Burt, M.L., Borchers, D.L., Jenkins, K.J. and Marques, T.A. (2014) Using mark–recapture distance sampling methods on line transect surveys. Methods in Ecology and Evolution . 5 (11) 1180-1191.
- Carvalho, J.S., Meyer, C.F.J., Vicente, L. & Marques, T. A. (2014) Carvalho, J.S., Meyer, C.F.J., Vicente, L. & Marques, T. A. Where to nest? Ecological determinants of chimpanzee nest abundance and distribution at the habitat and tree species scale”. American Journal of Primatology. 77: 186-199.
- Codling, E.A. (2014). Pest insect movement and dispersal as an example of applied movement ecology (Comment). Physics of Life Reviews, 11 533-535.
- Codling, E.A., Bode, N.W.F. (2014) Copycat dynamics in leaderless animal group navigation. Movement Ecology 2 11.
- Cole, D. J., Morgan, B.J.T., McCrea, R.S, Pradel, R., Gimenez, O. and Choquet, R. (2014) Does your species have memory? Capture-Recapture Data with Memory Models. Ecology and Evolution. 4, 2124-2133.
- Conn, P.B., Ver Hoef, J.M., McClintock, B.T., Moreland, E.E., London,J.L., Cameron, M.F. and Boveng, P.L. (2014) Estimating multi-species abundance using automated detection systems: ice-associated seals in the eastern Bering Sea Methods in Ecology and Evolution, 5: 1280-1293.
- Cowen, L.L.E., Besbeas, P.T., Morgan, B.J.T. and Schwarz, C.J.(2014) Open Access A comparison of abundance estimates from extended batch-marking and Jolly-Seber type experiments. Ecology and Evolution, 4, 210-218.
- Efford M.G.and Mowat G. (2014) Compensatory heterogeneity in spatially explicit capture-recapture data. Ecology 95, 1341–1348.
- Gimenez, O., Buckland, S.T., Morgan, B.J.T., Bez, N., Bertrand, S., Choquet, R., Dray, S., Etienne, M.-P., Fewster, R., Gosselin, F., Mérigot, B., Monestiez, P., Morales, J., Mortier, F., Munoz, F., Ovaskainen, O., Pavoine, S., Pradel, R., Schurr, F.M., Thomas, L., Thuiller, W., Trenkel, V., de Valpine, P. and Rexstad, E. (2014) Statistical ecology comes of age. Biology Letters 10 20140698.
- Guillera-Arroita, G., Hauser, C.E. & McCarthy, M.A. (2014) Optimal surveillance strategy for invasive species management when surveys stop after detection. Ecology and Evolution. 4, (10) 1751–1760.
- Guillera-Arroita, G., Lahoz-Monfort, J.J., and Elith, J. (2014) Maxent is not a presence-absence method: a comment on Thibaud et al. Methods in Ecology and Evolution. 5 1192-1197.
- Guillera-Arroita G., Lahoz-Monfort J.J., MacKenzie D.I., Wintle B.A. and McCarthy M.A. (2014) Ignoring imperfect detection in biological surveys is dangerous: a response to ‘Fitting and Interpreting Occupancy Models’. PLoS ONE 9: e99571.
- Guillera-Arroita, G., Ridout, M.S. and Morgan, B.J.T. (2014) Two-stage Bayesian study design for species occupancy estimation. Journal of Agricultural, Biological and Environmental Statistics 19, 278-291.
- Hammond, P.S., Macleod, K., Berggren, P., Borchers, D.L., Burt, M.L., Cañadas, A., Desportes, G., Donovan, G.P., Gilles, A., Gillespie, D., Gordon, J., Hedley, S., Hiby, L., Kuklik, I., Leaper, R., Lehnert, K., Leopold, M., Lovell, P., Øien, N., Paxton, C., Ridoux, V., Rogan, E., Samarra, F., Scheidat, M., Sequeira, M., Siebert, U., Skov, H., Swift, R., Tasker, M.L., Teilmann, J., Van Canneyt, O. and Vázquez, J.A. (2014) Large scale surveys for cetaceans: Line transect assumptions, reliability of abundance estimates and improving survey efficiency – A response to MacLeod. Biological Conservation 170: 338-339.
- Harrison, P.J., Buckland, S.T., Yuan, Y., Elston, D.A., Brewer, M.J., Johnston, A. and Pearce-Higgins, J.W. (2014) Assessing trends in biodiversity over space and time using the example of British breeding birds. J. App. Ecol. 51 1650-1660.
- Hastie, G. D., Donovan, C., Götz, T. & Janik, V. M. (2014) “Behavioral responses by grey seals (Halichoerus grypus) to high frequency sonar.” Marine pollution bulletin.
- Hubbard, B.A., Cole, D.J. and Morgan, B.J.T. (2014) Parameter Redundancy in Capture-Recapture-Recovery Models. Statistical Methodology, 17, 17-29.
- Isaak, D.J., Peterson, E.E., Ver Hoef, J.M., Wenger, S.J., Falke, J.A., Torgersen, C.E., Sowder,C. et al. (2014 Early View) Applications of spatial statistical network models to stream data. Wiley Interdisciplinary Reviews: Water. 1 (3)
- Johnson, Devin S., and Lowell Fritz. “agTrend: A Bayesian approach for estimating trends of aggregated abundance.” Methods in Ecology and Evolution 5.10 (2014): 1110-1115.
- King, R. (2014) Statistical Ecology. Annual Review of Statistics and its Application. 1 401-426.
- King, R., Bird, S. M., Overstall, A. M., Hay, G. and Hutchinson, S. J. (2014) Estimating Prevalence of Injecting Drug Users and Associated Death Rates in England Using Regional Data and Incorporating Prior Information. Journal of the Royal Statistical Society: Series A. 77 209-236.
- King, R. and McCrea, R.S. (2014) A generalised likelihood framework for partially observed capture-recapture-recovery models. Statistical Methodology, 17, 30-45.
- King, R., Bird, S. M., Overstall, A. M., Hay, G. and Hutchinson, S. J. (2014) Injecting Drug Users in Scotland, 2006: Number, Demography, and Opiate-related Death-rates. Addiction Research and Theory. 77 209-236.
- Kraak, S.B.M., Reid, D.G., Codling, E.A. (2014) Exploring the RTI (Real-Time Incentive) tariff-based approach to single-species fisheries management. Fisheries Research 155 90-102.
- Kun-Rodrigues, C., Salmona, J., Besolo, A., Rasolondraibe, E., Rabarivola, C., Marques,T.A. and Chikhi, L. (2014) New density estimates of a threatened sifaka species (Propithecus coquereli) in Ankarafantsika National Park. American Journal of Primatology. 76 , (6), 515-528.
- Lahoz-Monfort, J.J., Guillera-Arroita, G. and Wintle, B.A. (2014) Imperfect detection impacts the performance of species distribution models. Global Ecology and Biogeography. 23 (4) 504-515.
- Lahoz-Monfort, J.J., Harris, M.P., Morgan, B.J.T., Freeman, S.N. and Wanless, S. (2014) Exploring the consequences of reducing survey effort for detecting individual and temporal variability in survival. Journal of Applied Ecology, 51 (2) 534-543.
- Laake, J. L., D. Johnson, D. R. Diefenbach, and M. A. Ternent. (2014) Hidden Markov model for dependent mark loss and survival estimation. J. Agric. Biol. Environ. Stat. 19:522–538. DOI 10.1007/s13253-014-0190-1
- Langrock, R., Marques, T.A., Baird, R. and Thomas, L. (2014) Modeling the diving behavior of whales: a latent-variable approach with feedback and semi-Markovian components. Journal of Agricultural, Biological and Environmental Statistics. 19 (1), 82-100.
- McClintock, B.T., Bailey, L.L., Dreher, B.P. and Link, W.A. (2014) Probit models for capture–recapture data subject to imperfect detection, individual heterogeneity and misidentification. The Annals of Applied Statistics 8, 2461-2484.
- McClintock, B.T., Johnson, D.S., Hooten, M.B., Ver Hoef, J.M., & Morales, J.M. (2014) When to be discrete: the importance of time formulation in understanding animal movement. Movement Ecology 2(1), 21.
- McCrea, R.S., Morgan, B.J.T. and Pradel, R. (2014) Diagnostic goodness-of-fit tests for joint recapture and recovery models. Journal of Agricultural, Biological and Environmental Statistics, 19, 338-356.
- McKellar, A.E., Langrock, R., Walters, J.R. and Kesler, D.C. (2014) Using mixed hidden Markov models to examine behavioral states in a cooperatively breeding bird. Behavioural Ecology.
- Matechou, E., Dennis, E.B., Freeman, S.N., and Brereton, T. (2014) Monitoring abundance and phenology in (multivoltine) butterfly species: a novel mixture model. Journal of Applied Ecology. 51 766-775.
- Mieiro, C. L., Dolbeth, M., Marques, T. A.,Duarte, A.C., Pereira, M.E. & Pacheco, M. (2014) Mercury accumulation and tissue-specific antioxidant efficiency in the wild European sea bass (Dicentrarchus labrax) with emphasis on seasonality. Environmental Science and Pollution Research 21:10638-10651.
- Miller, D.L. and Wood, S.N. (2014 online) Finite area smoothing with generalized distance splines.
Environmental and Ecological Statistics
- Moretti, D., Thomas, L., Marques, T. A. , Harwood, J., Dilley, A., Neales,B., Shaffer,J., Mccarthy, E., New, L., Jarvis, S. & Morrissey, R. (2014) A risk function for behavioral disruption of Blainville’s beaked whales (Mesoplodon densirostris) from mid-frequency active sonar.
PLoS One, 9:e85064.
- Okot Omoya, E., Mudumba, T., Buckland, S.T., Mulondo, P. and Plumptre, A.J. (2014) Estimating population sizes of lions Panthera leo and spotted hyaenas Crocuta crocuta in Uganda’s savannah national parks using lure count methods. Oryx , 48, 394-401.
- Oedekoven, C.S., Buckland, S.T., Mackenzie, M.L., King, R., Evans, K.O. and Burger L.W., Jr. (2014) Bayesian Methods for Hierarchical Distance Sampling Models. Journal of Agricultural, Biological, and Environmental Statistics. 19, 219-239.
- Pedroso, N.M., Marques T.A. and Santos-Reis, M. (2014). Otter response to environmental changes imposed by large dams construction. Aquatic Conservation: Marine and Freshwater Ecosystems. 24, (1), 66-80.
- Piercy, J.J.B., Codling, E.A., Hill, A.J., Smith, D.J., Simpson, S.D. (2014) Habitat quality affects sound production and likely distance of detection on coral reefs. Marine Ecology Progress Series 516 35-47.
- Peterson, E.E. and Ver Hoef, J.M. (2014) STARS: An ArcGIS Toolset Used to Calculate the Spatial Information Needed to Fit Spatial Statistical Models to Stream Network Data. Journal of Statistical Software, 56 (2) 1 – 17.
- Photopoulou T., Fedak M.A., Thomas L. and Matthiopoulos J. (2014) Spatial variation in maximum dive depth in gray seals in relation to foraging. Marine Mammal Science. 30 (3) 923–938.
- Pledger, S. and Arnold, R. (2014) Multivariate methods using mixtures: correspondence analysis, scaling and pattern-detection. Computational Statistics and Data Analysis, 71 (14), 241-261.
- Read, A.J., Barco, S., Bell, J. Borchers, D.L., Burt, M.L., Cummings, E.W., Dunn, J., Fougeres, E.R., Hazen, L., Williams Hodge, L.E., Laura, A., McAlarney, R.J., Nilsson, P., Pabst, D.A., Paxton, C.G.M., Schneider, S.Z., Urian, K.W., Waples, D.M., McLellan, W.A. (2014) Occurrence, Distribution and Abundance of Cetaceans in Onslow Bay, North Carolina, USA. Journal of Cetacean Research and Management 14 23-25.
- Rumney, H.S., Potter, K., Mellor, P. K., Brant, J., Whomersley, P., Shaw, S., Barry, J., Kirby, M.F., and Law, R.J. (2014) Polycyclic aromatic hydrocarbons in fish from St Helena, South Atlantic, in relation to an historic wreck. Marine Pollution Bulletin 89 (1-2) 451-454.
- Russell, D.J.F., Brasseur, S., Thompson, D., Hastie, G.D., Janik, V.M., Aarts, G., McClintock, B.T., Matthiopoulos, J. and McConnell, B.J. (2014) Marine mammals trace anthropogenic structures at sea. Current Biology. 24, (14) 638.
- Schobernd, Z., Bacheler, N.and Conn, P.B. (2014) Evaluating the utility of alternative video monitoring metrics for indexing reef fish abundance. Canadian Journal of Fisheries and Aquatic Sciences. 71 (3) 464-471.
- Schofield, M. R. and Barker, R. J. (2014) Hierarchical modeling of abundance in closed population capture-recapture models under heterogeneity. Environmental and Ecological Statistics 21 (3) 435-451.
- Scott Hayward, L.A.S., MacKenzie, M.L., Donovan, C.R., Walker, C. and Ashe, E. (2014) Complex Region Spatial Smoother (CReSS) Journal of Computational and Graphical Statistics. 23 (2) 340-360
- Searle, K.R., Barber, J., Stubbins, F., Labuschagne, K., Carpenter, S., Butler, A., Denison, E., Sanders, C., Mellor, P.S., Wilson, A., Nelson, N., Gubbins, S. and Purse, B.V. (2014) Environmental Drivers of Culicoides Phenology: How Important Is Species-Specific Variation When Determining Disease Policy? PLoS One
- Silva, M.A., Jonsen, I., Russell, D.J.F., Prieto, R., Thompson, D. and Baumgartner, M.F. (2014)
Assessing Performance of Bayesian State-Space Models Fit to Argos Satellite Telemetry Locations Processed with Kalman Filtering PLoS One.
- Sutherland, C.S., Elston, D.A. and Lambin X. (2014) A demographic, spatially explicit patch occupancy model of metapopulation dynamics and persistence. ESA Ecology 95 (11) 3149–3160.
- Valente, A.M., Fonseca, C., Marques, T. A., Santos, J. P., Rodrigues, R. and Torres,R. T. (2014) Living on the edge: roe deer (Capreolus capreolus) density in the margins of its geographical range. PLoS One. 9: e88459.
- Ver Hoef, J.M., Peterson, E.E., Clifford, D. and Shah, R. (2014) SSN: An R Package for Spatial Statistical Modeling on Stream Networks. Journal of Statistical Software, 56(3) 1 – 45.
- Ver Hoef, J.M. and Temesgen, H. (2014) A comparsion of the spatial linear model to nearest neighbor (k-NN) methods for forestry applications. (2014) PloS ONE 8 (3) e59129. doi:10.1371/journal.pone.0059129
- Williams, R., Grand, J., Hooker, S.K., Buckland, S.T., Reeves, R.R., Rojas-Bracho, L., Sandilands, D. and Kaschner, K. (2014) Prioritizing global marine mammal habitats using density maps in place of range maps. Ecography. 37, (3), 212-220.
- Winiarski, K.J., Burt, M.L., Rexstad, E., Miller, D.L., Trocki, C.L., Paton, P.W.C. and McWilliams, S.R. ( 2014) Integrating aerial and ship surveys of marine birds into a combined density surface model: A case study of wintering Common Loons.
The Condor, 116 (2), 149-161.
- Winiarski, K.J., Miller, D.L., Paton, P.W.C. and McWilliams, S.R. (2014) A spatial conservation prioritization approach for protecting marine birds given proposed offshore wind energy development. Biological Conservation. 169, 79-88.
- Worthington, H., King, R. and Buckland, S.T. (2014) Analysing mark-recapture-recovery data in the presence of missing covariate data via multiple imputation. Journal of Agricultural, Biological and Environmental Statistics. 20 (1) 28-46.
2013
- Arranz, P., Borchers, D.L., Aguilar Soto, N., Johnson, M. and Cox, M. (2013) A new method to study inshore whale cue distribution from land-based observations. Marine Mammal Science. 30: 810–818.
- Augustin, N. H., Trenkel, V. M., Wood, S. N. and Lorance, P. (2013) Space-time modelling of blue ling for fisheries stock management. Environmetrics. 24 (2), 109-119.
- Barry, J., Birchenough, S., Norris, B. and Ware, S. (2013) On the Use of Sample Indices to Reflect Changes in Benthic Fauna Biodiversity. Ecological Indicators. 26, 154-162.
- Bispo, R., Bernardino, J., Marques, T.A. and Pestana, D. (2013) Modeling carcass removal time for avian mortality assessment in wind farms using survival analysis. Environmental and Ecological Statistics. 20 (1), 147-165.
- Bode, N.W.F., Codling, E.A. (2013) Human exit route choice in virtual crowd evacuations. Animal Behaviour, 86 347-358.
- Borchers, D.L., Zucchini,W., Heide-Jørgensen, M.P., Cañadas, A. and Langrock, R. (2013) Using Hidden Markov Models to Deal with Availability Bias on Line Transect Surveys. Biometrics 69 (3) 703-713.
- Brown C., Burslem D.F.R.P., Illian J.B., Bao L., Brockelman W., Cao M., Chang L.W., Dattaraja H.S., Davies S., Gunatilleke C.V.S., Gunatilleke I.U.A.N., Huang J., Kassim A.R., LaFranki J.V., Lian J., Lin L., Ma K., Mi X., Nathalang A., Noor S., Ong P., Sukumar R., Su S.H., Sun I.F., Suresh H.S., Tan S., Thompson J., Uriarte M., Valencia R., Yap S.L., Ye W. and Law R. (2013) Multispecies coexistence of trees in tropical forests: spatial signals of topographic niche differentiation increase with environmental heterogeneity.Proceedings of the Royal Society, Series B. 280 (1764).
- Carvalho, J.S., Marques, T.A. & Vicente, L. (2013 Online) Population status of Pan troglodytes verus in Lagoas de Cufada Natural Park, Guinea-Bissau. PLoS One. 8, (8) e71527.
- Carroll, E.L., Childerhouse, S.J., Fewster, R.M., Patenaude, N.J., Steel, D., Dunshea, G., Boren, L., and Baker, C.S. (2013) Accounting for female reproductive cycles in a superpopulation capture-recapture framework: application to southern right whales (Eubalaena australis). Ecological Applications. 23, 1677–1690.
- Codling, E.A., Dumbrell, A.J. (2013) Bridging the Gap between Theory and Data in Ecological Models. Ecological Complexity 16 1-8.
- Conn, P., McClintock, B.T., Cameron, M., Johnson, D.S., Moreland, E. and Boveng, P.L. (2013) Accommodating Species Identification Errors in Transect Surveys. Ecology. 94, 2607–2618.
- Conn, P.B. and Silber, G.K. (2013) Vessel speed restrictions reduce risk of collision-related mortality for North Atlantic right whales. Ecosphere 4: Article 43.
- Côrtes, M.C. and Illian, J.B. (2013) Fine-scale spatial pattern and genetic structure of an Amazonian herb across a heterogeneous landscape. Journal of Ecology
- Cox, M.J., Borchers, D.L., Kelly, N. (2013) nupoint: An R package for density estimation from point transects in the presence of nonuniform animal density. Methods in Ecology and Evolution, 4: 589–594.
- Dawson, S., Fletcher, D. and Slooten, E. (2013) Habitat use and conservation of an endangered dolphin. Endangered Species Research 21:45-54
- Dennis, E.B., Freeman, S.N., Brereton, T. and Roy, D.B. (2013) Indexing butterfly abundance whilst accounting for missing counts and variability in seasonal pattern. Methods in Ecology and Evolution. 4 (7), 637-645.
- Dornelas, M., Magurran, A., Buckland, S.T., Chao, A., Chazdon, R.L., Colwell, R.K., Curtis, T., Gaston, K.J., Gotelli, N.J., Kosnik, M.A., McGill, B., McCune, J.L., Morlon, H., Mumby, P.J., Øvreås, L., Studeny, A. and Vellend, M. (2013) Quantifying temporal change in biodiversity: challenges and opportunities. Proceedings of the Royal Society B: Biological Sciences. 280, 1750, art. no. 20121931.
- Efford, M.G., Borchers, D.L., Mowat, G. (2013) Varying effort in capture–recapture studies. Methods in Ecology and Evolution. 4 (7), 629-636.
- Efford, M.G. and Fewster, R.M. (2013) Estimating population size by spatially explicit capture–recapture. Oikos 122, 918-928
- Evans, K.O., Burger, L.W., Oedekoven, C.S., Smith, M.D., Riffell, S.K., Martin, J.A. and Buckland, S.T. (2013) Multi-region response to conservation buffers targeted for northern bobwhite . Journal of Wildlife Management. 77 (4) 716-725.
- Fewster, R.M. and Jupp, P.E. (2013) Information on parameters of interest decreases under transformations. Journal of Multivariate Analysis. 120, 36-39.
- Fletcher, D., Moller, H., Clucas, R., Bragg, C., Scott, D., Scofield, P., Hunter, C., Win, I., Newman, L., McKechnie, S. de Cruz, J. and Lyver. P. (2013) Age at first return to the breeding colony and juvenile survival of Sooty Shearwaters. The Condor 115:465-476
- Hammond, P.S., Macleod, K., Berggren, P., Borchers, D.L., Burt, M.L., Cañadas, A., Desportes, G., Donovan, G.P., Gilles, A., Gillespie, D., Gordon, J., Hedley, S., Hiby, L., Kuklik, I., Leaper, R., Lehnert, K., Leopold, M., Lovell, P., Øien, N., Paxton, C., Ridoux, V., Rogan, E., Samarra, F., Scheidat, M., Sequeira, M., Siebert, U., Skov, H., Swift, R., Tasker, M.L., Teilmann, J., Van Canneyt, O. and Vázquez, J.A. (2013) Cetacean abundance and distribution in European Atlantic shelf waters to inform conservation and management. Biological Conservation, 164: 107-122.
- Harris, K.J. and Blackwell, P.G. (2013) Flexible Continuous-Time Modelling for Heterogeneous Animal Movement. Ecological Modelling. 255 29-37.
- Illian, J.B., Martino, S., Søerbye, S.H., Gallego-Fernandez, J.B., Zunzunegui, M., Paz Esquivias, M. and Travis, J.M.J. (2013) Fitting complex ecological point process models with integrated nested Laplace approximation (INLA) Methods in Ecology and Evolution. 4 (4), 305-315.
- Jackson, H., Morgan, B.J.T. and Groombridge, J.J. (2013) How closely do measures of mitochondrial DNA control region diversity reflect recent trajectories of population decline in birds?
Conservation Genetics, 14, 1291-1296.
- Johnson, D.S., Conn, P.B., Hooten, M.B., Ray, J.C . and Pond B.A. (2013) Spatial occupancy models for large data sets. Ecology 94 (4), 801.
- Johnson, D.S., Hooten, M.B. and Kuhn, C.E. (2013)
Estimating animal resource selection from telemetry data using point process models Journal of Animal Ecology 82 (6) 1155-1164.
- Johnson, D.S., Ream, R.R., Towell, R.G., Williams, M.T. and Leon Guerrero, J. D. (2013) Bayesian Clustering of Animal Abundance Trends For Inference and Dimension Reduction. Journal of Agricultural Biological and Environmental Statistics. 18 (3), 299-313.
- Kéry, M., Guillera-Arroita, G. and Lahoz-Monfort, J.J. (2013) Analysing and mapping species range dynamics using occupancy models. Journal of Biogeography. 40 (8), 1463-1474.
- Laake, J.L. (2013) Capture-recapture analysis with hidden Markov models. AFSC Processed Report. 2013-04, 34p.
- Laake, J.L., Johnson, D.S. and Conn, P.B. (2013) marked: an R package for maximum likelihood and Markov Chain Monte Carlo analysis of capture–recapture data. Methods in Ecology and Evolution. 4 (9), 885-890.
- Lahoz-Monfort, J.J., Morgan, B.J.T., Harris, M.P., Daunt, F., Wanless, S. and Freeman, S.N. (2013) Breeding together: modeling productivity synchrony at a multi-species community. Ecology. 94 (1), 3-10.
- Langrock, R., Borchers, D.L. and Skaug, H. (2013)
Markov-modulated nonhomogeneous Poisson processes for modeling detections in surveys of marine mammal abundance”
Journal of the American Statistical Association. 108 (503), 840-851.
- Langrock, R. and King, R. (2013) Maximum Likelihood Estimation of Mark-recapture-recovery models in the Presence of Continuous Covariates. Annals of Applied Statistics. 7, 1709-1732.
- Law, R., Bersuder, P., Barry, J., Barber, J., Deaville, R. and Jepson, P. (2013) Organochlorine pesticides and chlorobiphenyls in the blubber of bycaught female common dolphins from England and Wales. Marine Pollution Bulletin Baseline, 69, 238-242.
- Lawrence, J.D., Gramacy, R.B., Thomas, L. and Buckland, S.T. (2013) The Importance of Prior Choice in Model Selection: a Density Dependence Example. Methods in Ecology and Evolution. 4, (1) 25-33.
- Lewis, N.D., Breckels, M.N., Steinke, M., Codling, E.A. (2013) Role of infochemical mediated zooplankton grazing in a phytoplankton competition model. Ecological Complexity. 16 41-50.
- Lewis, N.D., Morozov, A., Breckels, M.N., Steinke, M., Codling, E.A. (2013) Multitrophic interactions in the sea: assessing the effect of infochemical-mediated foraging in a 1-d spatial model. Mathematical Modelling of Natural Phenomena. 8 25-44.
- McClintock, B.T., Conn, P.B., Alonso, R.S. and Crooks, K.R. (2013) Integrated modeling of bilateral photo-identification data in mark-recapture analyses. Ecology. 94, 1464-1471.
- McClintock, B. T., Russell, D. J. F., Matthiopoulos, J., and King, R. (2013) Combining individual animal movement and ancillary biotelemetry data to investigate population-level activity budgets. Ecology. 94, 838-849.
- McClintock, B. T., Hill, J. M., Fritz, L., Chumbley, K., Luxa, K., Diefenbach, D. R. (2013) Mark-resight abundance estimation under incomplete identification of marked individuals. Methods in Ecology and Evolution.
- McCrea, R.S., Morgan, B.J.T. and Cole, D.J. (2013) Age-dependent mixture models for recovery data on animals marked at unknown age. Journal of the Royal Statistical Society Series C, Applied Statistics. 62 (1) 101-113.
- Matechou, E., Morgan, B.J.T., Pledger, S., Collazo, J.A. and Lyons, J.E. (2013) Integrated analysis of capture-recapture-resighting data and counts of unmarked birds at stop-over sites. Journal of Agricultural, Biological, and Environmental Statistics. 18 120-135. DOI: 10.1007/s13253-013-0127-0
- Matechou, E., Pledger, S., Efford, M., Morgan, B.J.T. and Thomson, D.L. (2013) Estimating age-specific survival when age is unknown: open population capture–recapture models with age structure and heterogeneity. Methods in Ecology and Evolution. 4 (7) 654-664.
- Marques, T.A., Buckland, S.T., Bispo, R. and Howland, B. (2013) Accounting for animal density gradients using independent information in distance sampling surveys Statistical Methods & Applications. 22, 67-80.
- Marques, J.T. , Pereira, M.R., Marques, T.A., Santos, C.D., Santana, J., Beja, P. and Palmeirim, J.M. (2013 online). Optimizing sampling design to deal with mist-net avoidance in amazonian birds and bats . PLoS ONE, 8:e74505.
- Marques, T.A., Thomas, L., Martin, S.W., Mellinger, D.K., Ward, J.A., Moretti, D.J., Harris, D. and Tyack, P.L. (2013) Estimating animal population density using passive acoustics. Biological Reviews. 88, 287-309.
- Martin, S.W., Marques, T.A., Thomas, L., Morrissey, R.P., Jarvis, S., DiMarzio, N., Moretti, D. and Mellinger D.(2013) Estimating minke whale (Balenoptera acutorostrata) boing sound density using passive acoustic sensors. Marine Mammal Science 29, 142-158.
- Miller, D.L., Burt, M.L., Rexstad, E.A. and Thomas, L. (2013) Spatial models for distance sampling data: recent developments and future directions. Methods in Ecology and Evolution 4 (11), 1001-1010.
- New, L. F., Harwood, J., Thomas, L., Donovan, C., Clark, J. S., Hastie, G., Thompson, P. M., Cheney, B., Scott‐Hayward, L. & Lusseau, D. (2013) “Modelling the biological significance of behavioural change in coastal bottlenose dolphins in response to disturbance.” Functional Ecology 27, (2). 314-322.
- Oedekoven, C.S., Buckland, S.T., Mackenzie, M.L., Evans, K.O. and Burger Jr, L.W.(2013) Improving distance sampling: accounting for covariates and non-independency between sampled sites. Journal of Applied Ecology. 50 (3), 786-793.
- Pazhayamadom, D.G., Kelly, C.J., Rogan, E., Codling, E.A. (2013) Self starting CUSUM approach for monitoring data poor fisheries. Fisheries Research. 145 114-127.
- Pledger, S., Baker, E. and Scribner, K. (2013) Breeding Return Times and Abundance in Capture–Recapture Models. Biometrics. 69, 991–1001.
- Plumptre, A.J., Sterling, E.J. and Buckland, S.T. (2013) Primate census and survey techniques. Primate Ecology and Conservation: A Handbook of Techniques (eds E.J. Sterling, N. Bynum and M.E. Blair). Pp. 10-26. Oxford University Press, Oxford.
- Russell, D.J.F., McConnell, B., Thompson, D., Duck, C., Morris, C., Harwood, J., Matthiopoulos, J. (2013), Uncovering the links between foraging and breeding regions in a highly mobile mammal. Journal of Applied Ecology. 50 (2),499-509.
- Schick, R.S., Kraus, S.D., Rolland, R.M., Knowlton, A.R., Hamilton, P.K., et al. (2013)
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2011
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2010
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- New, L.F., Matthiopoulos, J., Redpath, S. and Buckland, S.T. (2009) Fitting models of multiple hypotheses to partial population data: investigating the causes of cycles in red grouse. American Naturalist 174 399-412
- Newman, J., Fletcher, D., Moller, H., Bragg, C., Scott, D. and McKechnie, S. (2009) Estimates of productivity and detection probabilities of breeding attempts in the sooty shearwater (Puffinus griseus), a burrow-nesting petrel. Wildlife Research 36: 159-168.
- Newman, J., Scott, D., Bragg, C., McKechnie, S., Moller, H. and Fletcher, D. (2009) Estimating regional population size and annual harvest intensity of the sooty shearwater in New Zealand. New Zealand Journal of Zoology 36: 307-323.
- Newman, K.B., Fernández, C., Thomas, L. and Buckland, S.T. (2009) Monte Carlo inference for state-space models of wild animal populations. Biometrics 65 572-583
- Nichols, J.D., Thomas, L. and Conn, P.B. (2009) Inferences about landbird abundance from count data: recent advances and future directions. Modeling Demographic Processes in Marked Populations. Springer Series: Environmental and Ecological Statistics 3 203-238 (Eds. Thomson, D.L., Cooch, E.G. and Conroy, M.J.)
- Paxton, C.G.M. (2009) The plural of ‘anecdote’ can be ‘data’: statistical analysis of viewing distances in reports of unidentified giant marine animals 1758 – 2000. Journal of Zoology 279 381-387
- Paxton, C.G.M., Burt, M.L., Hedley, S., Víkingsson, G.A., Gunnlaugsson, Th. and Desportes, G. (2009) Density surface fitting to estimate the abundance of humpback whales based on the NASS-95 and NASS-2001 aerial and shipboard surveys. NAMMCO Scientific Publications 7 143-160
- Paxton, C.G.M., Winfield, I.J., Fletcher, J.M., George, D. G. and Hewitt, D.P. (2009) Investigation of first year biotic and abiotic influences on the recruitment of pike (Esox lucius) in Windermere, U.K. using Generalized Additive Models. Journal of Fish Biology 74 2279-2298
- Pike, D.G., Paxton, C.G.M., Gunnlaugsson, Th. and Víkingsson, G.A. (2009) Trends in the abundance of cetaceans from aerial surveys in Icelandic coastal waters, 1986-2001. NAMMCO Scientific Publications 7 117-142
- Reynolds, T.J., King, R., Harwood, J., Frederiksen, M., Harris, M.P. and Wanless, S. (2009) Integrated data analysis in the presence of emigration and mark loss. JABES 14 411-431
- Ridout, M.S. and Linkie, M. (2009) Estimating overlap of daily activity patterns from camera trap data. JABES 14 322-337
- Sharples, R.J., Mackenzie, M.L. and Hammond, P.S. (2009) Estimating seasonal abundance of a central place forager using counts and telemetry data. Marine Ecology Progress Series 378 289-298
- Scott, D., Moller, H., Fletcher, D., Newman, J., Aryal, J., Bragg, C. and Charleton, K. (2009) Predictive habitat modelling to estimate petrel breeding colony sizes: Sooty shearwater (Puffinus griseus) and mottled petrels (Pterodroma inexpectata) on Whenua Hou Island. New Zealand Journal of Zoology 36: 291-306.
- Thomas, L. 2009. Grey seals red in tooth and claw: how Darwin helps model their population. Significance 6 (3), 108-112.
- Tavecchia, G., Besbeas, P.T., Coulson, T., Morgan, B.J.T. and Clutton-Brock, T.H. (2009) Estimating population size and hidden demographic parameters with state-space modelling. American Naturalist 173 722-733
- Thomson, D.L., Conroy, M.J., Anderson, D.R., Burnham, K.P., Cooch, E.G., Francis, C.M., Lebreton, J.-D., Lindberg, M.S., Morgan, B.J.T., Otis, D.L. and White, G.C. (2009) Standardising terminology and notation for the analysis of demographic processes in marked populations. Modelling Demographic Processes in Marked Populations. Springer Series: Environmental and Ecological Statistics 3 1099-1106 (Eds. Thomson, D.L., Cooch, E.G. and Conroy, M.J.)
- Viana, M., Pierce, G.J., Illian, J.B., MacLeod, C.D., Bailey, N., Wang, J. and Hastie, L.C. (2009) Seasonal movements of veined squid Loligo forbesi in Scottish (UK) waters. Aquatic Living Resources 22 (3) 291-305.
- Williams, R. and Thomas, L. (2009) Cost-effective abundance estimation of rare marine animals: small-boat surveys for killer whales in British Columbia Canada. Biological Conservation 142 1542-1547.
2008
- Aarts, G., Mackenzie, M.L., McConnell, B.J., Fedak, M.A. and Matthiopoulos, J. (2008) Estimating space use and environmental preference from wildlife telemetry data. Ecography 31 140-160
- Baillie, S.R., Brooks, S.P., King, R. and Thomas, L. (2008) Using a state-space model of the UK Song Thrush Turdus philomelos population to diagnose the causes of a population decline. Thomson, D.L., E.G. Cooch and M.J. Conroy (Eds.) Modeling Demographic Processes in Marked Populations. Environmental and Ecological Statistics Vol 3, 543-564. Springer. ISBN: 978-0-387-78150-1.
- Besbeas, P. and Morgan, B.J.T. (2008) Improved estimation of the stable laws. Statistics and Computing 18 (2) 219-231
- Bernal, M., Ibaibarriaga, L., Lago de Lanzos, A., Lonergan, M.E., Hernandez, C. Franco, C. Rasines, I., Valdes, L. and Borchers, D.L. (2008) Using multinomial models to analyse data from sardine incubation experiments; a comparison with traditional techniques. Ices Journal of Marine Science 65 51-59
- Borchers, D.L. and Efford, M. (2008) Spatially explicit maximum likelihood methods for capture-recapture studies. Biometrics 64 377-385
- Brooks, S.P., Freeman, S.N., Greenwood, J.J.D., King, R. and Mazzetta, C. (2008) Quantifying conservation concern – Bayesian statistics and the red data lists. Biological Conservation 141 1436-1441
- Buckland, S.T., Marsden, S.J. and Green, R.E (2008) Estimating bird abundance: making methods work. Bird Conservation International 18 S91-S108
- Burridge, C., Craw, D., Fletcher, D. and Waters, J. (2008) Geological dates and molecular rates: fish DNA sheds light on time-dependency. Molecular Biology and Evolution 25: 624-633.
- Catchpole, E.A., Morgan, B.J.T. and Tavecchia, G.J. (2008) A new method for analysing discrete life history data with missing covariate values. Roy. Statist. Soc. B 70 445-460
- Clucas, R., Fletcher, D. and Moller, H. (2008) Estimates of adult survival rate for three sooty shearwater (Puffinus griseus) colonies in New Zealand. Emu – Austral Ornithology 108: 237-250.
- Conroy, M., Barker, R., Dillingham, P., Fletcher, D., Gormley, A. and Westbrooke, I. (2008) Application of decision theory to conservation management: recovery of Hector’s dolphin. Wildlife Research 35: 93-102.
- Dillingham, P. and Fletcher, D. (2008) Estimating the ability of birds to sustain additional human-caused mortalities using a simple decision rule and allometric relationships. Biological Conservation 141: 1783-1792.
- Fewster, R.M., Southwell, C., Borchers, D.L., Buckland, S.T. and Pople, A.R. (2008) The influence of animal mobility on the assumption of uniform distances in aerial line transect surveys. Wildlife Research 35 275-288
- Fletcher, D. (2008) Confidence intervals for the mean of the delta-lognormal distribution. Environmental and Ecological Statistics 15: 175-189.
- Freeman, S.N. and Newson, S.E. (2008) On a log-linear approach to detecting ecological interactions in monitored populations. Ibis 150(2) 250-258
- Giminez, O., Bonner, S., King, R., Parker, R.A., Brooks, S., Jamieson, L.E., Grosbois, V., Morgan, B.J.T. and Thomas, L. (2008) WinBUGS for population ecologists: Bayesian modeling using Markov Chain Monte Carlo methods. Thomson, D.L., E.G. Cooch and M.J. Conroy (Eds.) Modeling Demographic Processes in Marked Populations. Environmental and Ecological Statistics Vol 3, 885-918. Springer. ISBN: 978-0-387-78150-1.
- Harris, C.M., Calladine, J., Wernham, C.W. and Park, K.J. (2008) Impacts of piscivorous birds on salmonid populations and game fisheries in Scotland: a review. Wildlife Biology 14(4) 395-411
- Heide-Jørgensen, M.P., Borchers, D.L., Witting, L., Simon, M.J., Laidre, K.L., Rosing-Asvid, A. and Pike, D.G. (2008) Estimates of large whale abundance in West Greenland waters from an aerial survey in 2005. JCRM 10 119-129
- Johnson, L.R. (2008) Microcolony and biofilm formation as a survival strategy for bacteria. Journal of Theoretical Biology 251 24-34
- Katara, I., Illian, J.B., Pierce, G.J., Scott, B. and Wang, J. (2008) Atmospheric forcing on chlorophyll concentration in the Mediterranean. Hydrobiologia 612(1) 33-48
- King, R. and Brooks, S.P. (2008) On the Bayesian estimation of a closed population size in the presence of heterogeneity and model uncertainty. Biometrics 64 816-824
- King, R., Brooks, S.P. and Coulson, T. (2008) Analysing complex capture-recapture data: incorporating time-varying covariate information. Biometrics 64 1187-1195
- King, R., Brooks, S.P., Mazzetta, C., Freeman, S.N. and Morgan, B.J.T. (2008) Identifying and diagnosing population declines: a Bayesian assessment of lapwings in the UK. Applied Statistics 57 (5) 609-632
- Morgan, B.J.T. and Ridout, M.S. (2008) A new mixture model for capture heterogeneity. Applied Statistics 57 (4) 433-446.
- Nichols, J.D., Thomas, L. and Conn, P.B. (2008) Inferences about landbird abundance from count data: recent advances and future directions. Thomson, D.L., E.G. Cooch and M.J. Conroy (Eds.) Modeling Demographic Processes in Marked Populations. Environmental and Ecological Statistics Vol 3, 203-238 Springer. ISBN: 978-0-387-78150-1.
- Palmer, K.J., Ridout, M.S. and Morgan, B.J.T. (2008) Modelling cell generation times by using the tempered stable distribution. Journal of the Royal Statistical Society: Series C (Applied Statistics) 57(4) 379-397
- Panigada, S., Zanardelli, M., Mackenzie, M.L., Donovan, C.R., Mélin, F. and Hammond, P.S. (2008) Modelling habitat preferences for fin whales and striped dolphins in the Pelagos Sanctuary (Western Mediterranean Sea) with physiographic and remote sensing variables. Remote Sensing of Environment 112 3400-3412
- Patterson, T.A., Thomas, L.J., Wilcox, C., Ovaskainen, O. and Matthiopoulos, J. (2008) State-space models of individual animal movement. Trends in Ecology and Evolution 23(2) 87-94
- Scott, D., Scofield, P., Hunter, C. and Fletcher, D. (2008) Decline of sooty shearwaters, puffinus griseus, on The Snares, New Zealand. Papers and Proceedings of the Royal Society of Tasmania 142: 185-196.
- Southwell, C., Paxton, C.G.M. and Borchers, D.L. (2008) Detectability of penguins in aerial surveys over the pack-ice off Antarctica. Wildlife Research 35 349-357
- Southwell, C., Paxton, C.G.M., Borchers, D.L., Boveng, P. and de la Mare, W. (2008) Taking account of dependent species in management of the Southern Ocean krill fishery: estimating crabeater seal abundance off east Antarctica. Journal of Applied Ecology 45 622-631
- Southwell, C., Paxton, C.G.M., Borchers, D.L., Boveng, P., Rogers, T., de la Mare, W.K. (2008) Uncommon or cryptic? Challenges in estimating leopard seal abundance by conventional but state-or-the-art methods. Deep-Sea Research 55 519-531
- Waugh, S., MacKenzie, D. and Fletcher, D. (2008) Seabird bycatch in New Zealand trawl and longline fisheries, 1998-2004. Papers and Proceedings of the Royal Society of Tasmania 142: 45-66.
2007
- Buckland, S.T., Borchers, D.L., Johnston, A., Henrys, P.A. and Marques, T.A. (2007) Line transect methods for plant surveys. Biometrics 63 989-998
- Buckland, S.T., Newman, K.B., Fernández, C., Thomas, L. and Harwood, J. (2007) Embedding population dynamics models in inference. Statistical Science 22 44-58
- Byrne, L.J., Cox, B.S., Cole, D.J., Ridout, M.S., Morgan, B.J.T. and Tuite, M.F. (2007) Cell division is essential for elimination of the yeast [PSI+] prion by guanidine hydrochloride. Proceedings of the National Academy of Sciences of the United States of America 104(28) 11688-11693
- Cole, D.J., Ridout, M.S., Morgan, B.J.T., Byrne, L.J. and Tuite, M.F. (2007) Approximations for expected generation number. Biometrics 63(4) 1023-1030
- DuFresne, S., Fletcher, D. and Dawson, S. (2006) The effect of line transect placement in a coastal distance sampling survey. Journal of Cetacean Research and Management 8: 79-85.
- Fletcher, D. and Faddy,M. (2007) Confidence intervals for the expected abundance of rare species. Journal of Agricultural, Biological and Environmental Statistics 12: 315-324.
- Freeman, S.N., Noble, D.G., Newson, S.E. and Baillie, S.R. (2007) Modelling population changes using data from different surveys: the Common Birds Census and the Breeding Bird Survey. Bird Study 54(1) 61-72
- Freeman, S.N., Robinson, R.A., Clark, J.A., Griffin, B.M. and Adams, S.Y. (2007) Changing demography and population decline in the Common Starling Sturnus vulgaris: A multisite approach to Integrated Population Monitoring. Ibis 149(3) 587-596
- Gauthier, G., Besbeas, P., Lebreton, J.-D. and Morgan, B.J.T. (2007) Population growth in Greater Snow Geese: a new modelling approach. Ecology 88 1420-1429
- Hayes, N.V.L., Blackburn, E., Smart, L.V., Boyle, M.M., Russell, G.A., Frost, T.M., Morgan, B.J.T., Baines, A.J. and Gullick, W.J. (2007) Identification and characterization of novel spliced variants of neuregulin 4 in prostate cancer. Clinical Cancer Research 13(11) 3147-3155
- Heide-Jorgensen, M.P., Laidre, K., Borchers, D.L., Samarra, F. and Stern, H. (2007) Increasing abundance of bowhead whales in west Greenland. Biology Letters 3 277-280
- Ibaibarriaga, L., Bernal, M., Motos, L., Uriarte, A., Lonergan, M.E., Borchers, D.L. and Wood, S.N. (2007) Estimation of development properties of stage-classified biological processes using multinomial models: a case study of the Bay of Biscay anchovy (Engraulis encrasicolis, L.) egg development. Canadian Journal of Fisheries and Aquatic Sciences 64 539-553
- Illian, J.B. and Burslem, D.F.R.P. (2007) Contributions of spatial point process modelling to biodiversity theory. Journal de la Société Franςaise de Statistique 148 9-29
- Jamieson, I., Tracy, L., Fletcher, D. and Armstrong, D. (2007) Moderate inbreeding depression in a reintroduced population of North Island robins. Animal Conservation 10: 95-102.
- McKechnie, S., Fletcher, D., Moller, H., Scott, D., Newman, J., and Bragg, C. (2007) Estimating and correcting for bias in population assessments of sooty shearwaters. Journal of Wildlife Management 71: 1325-1335.
- Magle, S.B., McClintock, B.T., Tripp, D.W., White, G.C., Antolin, M.F. and Crooks, K.R. (2007) Mark-resight methodology for estimating population densities for prairie dogs. Journal of Wildlife Management 71 2067-2073
- Marques, T.A., Thomas, L., Fancy, S.G. and Buckland, S.T. (2007) Improving estimates of bird density using multiple covariate distance sampling. The Auk 124 1229-1243
- Mazzetta, C., Brooks, S.P. and Freeman, S.N. (2007) On smoothing trends in population index modelling. Biometrics 63(4) 1007-1014
- McClintock, B.T. and White, G.C. (2007) Bighorn sheep abundance following a suspected pneumonia epidemic in Rocky Mountain National Park. Journal of Wildlife Management 71 183-189
- Miles, W., Freeman, S.N., Harrison, N.M. and Balmer, D.E. (2007) Measuring passerine productivity using constant effort sites: the effect of missed visits. Ringing & Migration 23(4) 231-237
- Morgan, B.J.T, Palmer, K.J. and Ridout, M.S. (2007) Negative score test statistic. The American Statistician 61 (4) 285-288
- Morgan, B.J.T., Revell, D.J. and Freeman, S.N. (2007) Simplified likelihoods for site occupancy models. Biometrics 63 618-621
- Robinson, R.A., Freeman, S.N., Balmer, D.E. and Grantham, M.J. (2007) Cetti’s Warbler Cettia cetti: analysis of an expanding population. Bird Study 54(2) 230-235
- Southwell, C., Borchers, D.L., Paxton, C.G.M., Burt, M.L. and de la Mare, W. (2007) Estimation of detection probability in aerial surveys of Antarctic pack-ice seals. JABES 12 41-54
- Stephenson, C.M., Kohn, D., Park, K.J., Edwards, C., Atkinson, R. and Travis, J.M.J (2007) Testing mechanistic models of seed dispersal for the invasive Rhododendron ponticum (L.). Perspectives in Plant Ecology, Evolution and Systematics 9(1) 15-28
- Stephenson, C.M., Matthiopoulos, J. and Harwood, J. (2007) Influence of the physical environment and conspecific aggression on the spatial arrangement of breeding grey seals. Ecological Informatics 2 308-317
2006
- Besbeas, P. and Freeman, S.N. (2006) Methods for joint inference from panel survey and demographic data. Ecology 87(5) 1138-1145
- Borchers, D.L., Laake, J.L., Southwell, C. and Paxton, C.G.M. (2006) Accommodating unmodelled heterogeneity in double-observer distance sampling surveys. Biometrics 62 372-378
- Buckland, S.T. (2006) Point transect surveys for songbirds: robust methodologies. The Auk123 345-357
- Buckland, S.T., Summers, R.W., Borchers, D.L. and Thomas, L. (2006) Point transect sampling with traps or lures. J. App. Ecol. 43 377-384
- Gimenez, O., Barbraud, C., Crainiceanu, C., Jenouvrier, S. and Morgan, B.J.T. (2006) Semiparametric regression in capture-recapture modelling. Biometrics 62 691-698
- Hammershoj, M., Travis, J.M.J. and Stephenson, C.M. (2006) Incorporating evolutionary processes into a spatially-explicit model: exploring the consequences of mink-farm closures in Denmark. Ecography 29 465-476
- Harrison, P.J., Buckland, S.T., Thomas, L., Harris, R., Pomeroy, P.P. and Harwood, J. (2006) Incorporating movement into models of grey seal population dynamics. J. Anim. Ecol. 75634-645
- Johnson, L.R. and Mangel, M. (2006) Life histories and the evolution of aging in bacteria and other single-celled organisms. Mechanisms of Aging and Development 127(10) 786-793
- King, R., Brooks, S.P., Morgan, B.J.T. and Coulson, T. (2006) Factors influencing Soay sheep survival: a Bayesian analysis. Biometrics 62 211-220
- Marques, T.A., Andersen, M., Christensen-Dalsgaard, S., Belikov, S., Boltunov, A., Wiig, Ø., Buckland, S.T. and Aars, J. (2006) Comparing distance estimation methods in a helicopter line transect survey. Wildlife Society Bulletin 34 759-763
- McClintock, B.T., White, G.C. and Burnham, K.P. (2006) A robust design mark-resight abundance estimator allowing heterogeneity in resighting probabilities. JABES 11 231-248
- Moyes, K., Coulson, T., Morgan, B.J.T., Clutton-Brock, T.H., Donald, A. and Morris, S.J. (2006) Cumulative costs of reproduction in female red deer. Okios 115 241-252
- Newman, K.B., Buckland, S.T., Lindley, S.T., Thomas, L. and Fernández, C. (2006) Hidden process models for animal population dynamics. Ecological Applications 16 74-86
- Ridout, M.S., Cole, D.J., Morgan, B.J.T., Byrne, L.J. and Tuite, M.F. (2006) New approximations to the Malthusian parameter. Biometrics 62(4) 1216-1223
- Schneider, M., Law, R. and Illian, J.B. (2006) Quantification of neighbourhood-dependent plant growth by Bayesian hierarchical modelling. Journal of Ecology 94 310-321
- Stephenson, C.M., MacKenzie, M.L., Edwards, C. and Travis, J.M.J. (2006) Modelling establishment probabilities of an exotic plant, Rhododendron ponticum, invading a heterogeneous, woodland landscape using logistic regression with spatial autocorrelation. Ecological Modelling 193(3-4) 747-758
- Tocher, M., Fletcher, D. and Bishop, P. (2006) A modelling approach to determine a translocation scenario for the endangered New Zealand frog Leiopelma hamiltoni. Herpetological Journal 16: 97-106
- Wanless, S., Frederiksen, M., Harris, M.P. and Freeman, S.N. (2006) Survival of Northern Gannets Morus bassanus in Britain and Ireland, 1959-2002. Bird Study 53(1) 86-91
- Young, I.M., Illian, J.B., Harris, J.A. and Ritz, K. (2006) Comment on Zhao et al.(2005) “Does ergosterol concentration provide a reliable estimate of soil fungal biomass?”. Soil Biology and Biochemistry 38 1500-1501