Publications

Journal Articles and Book Chapters

In press

Barnes, C., Irigoien, X., De Oliveira, J.A.A., Maxwell, D. and Jennings,S. (in press) Predicting marine phytoplankton community size structure from empirical relationships with remotely-sensed variables. Journal of Plankton Research doi: 10.1093/plankt/fbq088

Barry, J. and Coggan, R. (in press) The Visual Fast Count method: a critical examination and development for underwater video sampling. Aquatic Biology.

Besbeas, P. (in press) Estimation. Encyclopedia of Research Design. Sage Publications (Ed Salkind, N.J.)

Bierman, S., Butler, A., Marion, G. and Kühn, I. (in press) Bayesian image restoration to analyze biological atlas data with spatially varying non-detection probabilities. Ecography

Boakes, D.E., Codling, E.A., Thorn, G.J., Steinke, M. (in press) Analysis and modelling of swimming behaviour in Oxyrrhis marina.

Bonner, S.J., Morgan, B.J.T. and King, R. (in press) Continuous covariates in mark-recapture-recovery analysis: A comparison of methods. Biometrics

Borchers, D.L. (in press) A non-technical overview of spatially explicit capture–recapture models. Journal of Ornithology

Buckland, S.T., Laake, J.L. and Borchers, D.L. (in press) Double-observer line transect methods: levels of independence. Biometrics

Buckland, S.T., Plumptre, A.J., Thomas, L. and Rexstad, E.A. (in press) Line transect sampling of primates: can animal-to-observer distance methods work? International Journal of Primatology

Buckland, S.T., Plumptre, A.J., Thomas, L. and Rexstad, E.A. (in press) Design and analysis of line transect surveys for primates. International Journal of Primatology

Carvell, C., Osborne, J.L., Bourke, A.F.G., Freeman, S.N., Pywell, R.F. and Heard, M.S. (in press) Bumble bee species’ responses to a targeted conservation measure depend on landscape context and habitat quality. Ecological Applications

Codling, E.A. and Plank, M.J. (in press) Turn designation, sampling rate and the misidentification of power-laws in movement path data using maximum likelihood estimates. Journal of Theoretical Ecology

Cole, D.J. (in press) Determining Parameter Redundancy of Multi-state Mark-recapture Models for Sea Birds.n Journal of Ornithology DOI 10.1007/s10336-010-0574-0

Cole, D.J. and Morgan, B.J.T. (in press) A note on determining parameter redundancy in age-dependent tag return models for estimating fishing mortality, natural mortality and selectivity. JABES DOI: 10.1007/s13253-010-0026-6

Cole, D.J. and Morgan, B.J.T. (in press) Parameter redundancy with covariates. Biometrika DOI: 10.1093/biomet/asq041

Cooper, K., Ware, S., Vanstaen, K. and Barry, J. (in press) Gravel Seeding – a suitable technique for restoration of the seabed following marine aggregate dredging? Estuarine and Coastal Shelf Science.

Cox, M.J., Borchers, D.L. and Brierley, A.S. (in press) Estimating Antarctic krill (Eupausia superb) density from multibeam echosounder observations using distance sampling methods. Applied Statistics

Fieberg, J., Matthiopoulos, J., Hebblewhite, M., Frair, J. and Boyce, M. (2010) Autocorrelation and studies of habitat selection: problem, red herring, or opportunity? Philosophical Transactions of the Royal Society B

Freeman, S.N. and Besbeas, P. (in press) Quantifying changes in abundance without counting animals: extensions to a method of fitting Integrated Population Models. Journal of Ornithology DOI: 10.1007/s10336-011-0667-4

Guillera-Arroita, G., Morgan, B.J.T., Ridout, M.S. and Linkie, M. (to appear) Species occupancy modeling for detection data collected along a transect. JABES.

Hayes, N., Blackburn, E., Boyle, M., Russell, G., Frost, T., Morgan, B. and Gullick, W. (to appear) Expression of Neureguolin 4 splice variants in normal human tissues and prostate cancer and their effects on cell motility. Endocrine-Related Cancer

Heide-Jørgensen, M.P., Laidre, K.L., Borchers, D.L., Stem, H. and Simon, M.J. (in press) The effect of sea ice loss on beluga whales (Delphinapterus leucas) in West Greenland. Polar Research

Heide-Jørgensen, M.P., Laidre, K.L., Burt, M.L., Borchers, D.L., Hansen, R.G., Rasmussen, M. And Fossette, S. (in press) Abundance of narwhals (Monodon monoceros) in Greenland. Journal of Mammalogy

Heide-Jørgensen, M.P., Laidre, K.L., Hansen, R.G., Burt, M.L., Borchers, D.L., Hansén, J., Harding, K., Rasmussen, M., Dietz, R and Teilmann, J. (in press) Rate of increase and current abundance of humpback whales in West Greenland. Journal of Cetacean Research and Management.

Heide-Jørgensen, M.P., Laidre, K.L., Simon, M., Rasmussen, M., Burt, M.L. and Borchers, D.L. (in press) Abundance estimates of fin whales in West Greenland in 2007. JCRM

Illian, J.B. and Hendrichsen, D.K. (in press) Gibbs point process models with fixed and random effects. Environmetrics

Lewis, F.I., Butler, A. and Gilbert, L. (in press). A unified approach to model selection using the likelihood ratio test: an application to tick questing abundance. Methods in Ecology and Evolution.

Johnson, L.R. (in press) Implications of dispersal and life history strategies for the persistence of linyphiid spider populations. Ecological Modelling

Katara, I., Illian, J.B., Pierce, G.J., Scott, B. and Wang, J. (in press) Oceanic patterns in the Mediterranean: Are they influenced by teleconnection patterns? International Journal of Climatology

King, R. (in press) Statistical Ecology in Handbook of Markov chain Monte Carlo Eds. Brooks, Gelman, Jones and Meng. CRC Press.

Marion, G., Grabaum, R., Bierman, S., Butler, A., Grescho, V., Spangenberg, J., Kühn, I., Hammen, V., Hickler, T., Hulme, P., Douguet, J.M., Peterson, K., Potts, S., Reginster, I., Maxim, L., Omann, I. and Settele, J. (in press) Biodiversity risk assessment for Europe – putting it all together. Atlas of Biodiversity Risk Eds. Josef Settele et al. Pensoft, Sofia & Moscow.

Marques, T.A., Buckland, S.T., Borchers, D.L., Tosh, D. and McDonald, R.A. (in press) Point transect sampling along linear features. Biometrics DOI: 10.1111/j.1541-0420.2009.01381.x

Marques, T.A., Buckland, S.T., Borchers, D.L., Rexstad, E. and Thomas, L. (in press) Distance sampling. Springer’s International Lexicon of Statistical Sciences

Marques, T. A., Thomas, L., and J. A. Royle. (in press) A hierarchical model for spatial capture-recapture data: comment. Ecology. DOI: 10.1890/10-1440.1

Mazzetta, C. (in press) Age-specificity in conditional ring-recovery models. JABES

McClintock, B.T., Bailey, L.L., Pollock, K.H. and Simons, T.R. (in press) Unmodeled observation error induces bias when inferring patterns and dynamics of species occurrence based on auditory detections. Ecology

McCrea, R.S. and Morgan, B.J.T. (in press) Multi-site mark recapture model selection using score tests. Biometrics

McCrea, R.S., Morgan, B.J.T. and Bregnballe, T. (in press) Model comparison and assessment for multi-state capture-recapture-recovery models. Journal of Ornithology.

Miller, D., Morgan, B.J.T., Ridout, M.S., Carey, P. and Rothery, P. (in press) Methods for exact perturbation analysis. Methods in Ecology and Evolution

Moyes, K. Morgan, B. Moprris, A. Morris, S. Clutton-Brock, T. and Coulson, T. (to appear)Individual differences in reproductive costs examined using multi-state methods. J. Animal Ecology

Oliver, L.J., Morgan, B.J.T., Durant, S.M. and Pettorelli, N. (to appear) Individual heterogeneity in recapture probability and survival estimates. Ecological Modelling

Palmer, K.J., Ridout, M.S. and Morgan, B.J.T. (in press) Analysing curing of the [PSI+] prion by simulating prion kinetic models. J. Theoretical Biology

Paxton, C.G.M., Hedley, S. and Bannister, J.L. (in press) Group IV Humpback whales: their status from aerial and land-based surveys off Western Australia, 2005. JCRM

Riley, W.D., Maxwell, D.L., Ives, M.J. and Bendall, B. (in press) Some observations on the impact of temperature and low flow on the onset of downstream movement of wild Atlantic salmon, Salmo salar L., smolts. Aquaculture

Robinson, R. A., Baillie, S. R. and King, R. (in press) Population Processes in European Blackbirds Turdus merula: A State-space Approach. Journal of Ornithology

Russell, R.E., Lehmkuhl, J.F., Buckland, S.T. and Saab, V.A. (in press) Short-term responses of red squirrels to prescribed burning in the interior Pacific Northwest, USA. Journal of Wildlife Management

Smout, S., King, R. and Pomeroy, P. (in press) Estimating demographic parameters for capture-recapture data in the presence of multiple mark types. Environmental and Ecological Statistics

Smout, S.C., King, R. and Pomeroy, P.P. (in press) Integrating Heterogeneity of Detection and Mark Loss to Estimate Survival and Transience in UK Colonies of Grey Seal. Journal of Applied Ecology

Summers, R.W. and Buckland, S.T. (in press) A first survey of the global population size and distribution of the Scottish crossbill Loxia scotica. Bird Conservation International

Thomas, L., Buckland, S.T., Rexstad, E.A., Laake, J.L., Strindberg, S., Hedley, S.L., Bishop, J.R.B., Marques, T.A. and Burnham, K.P. (in press) Distance software: design and analysis of distance sampling surveys for estimating population size. J. App. Ecol.

Thomsen, F., McCully, S.R., Weiss, L., Wood, D., Warr, K., Law, R. and Barry, J. (in press) Cetacean stock assessment in relation to exploration and production industry sound: current knowledge and data needs. Marine Mammals.

Viallefont, A., Besbeas, P., Morgan, B.J.T. and McCrea, R.S. (in press) Estimating survival and transition rates from aggergate sightings of animals. Journal of Ornithology.

Viana, M., Pierce, G.J., Illian, J.B., MacLeod, C.D., Bailey, N., Wang, J. and Hastie, L.C. (in press) Seasonal movements of veined squid Loligo forbesi in Scottish (UK) waters. Aquatic Living Resources

Walker, C.G., Mackenzie, M.L., Donovan, C.R. and O’Sullivan, M.J. (in press) SALSA: A Spatially Adaptive Local Smoothing Algorithm. Journal of Statistical Computation and Simulation